PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4289_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 724aa    MW: 79465.8 Da    PI: 7.3872
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4289_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23113214199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +   ++
  Neem_4289_f_1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--QN 204
                    89****************************997556555..8************************************************43..67 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  Neem_4289_f_1 205 GDLCVGIRRA 214
                    778****996 PP

2Auxin_resp111.67.6e-37291374183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa  a+++++FevvY+Prast+eF+vk++ v++a++v++  GmRfkmafetedss++++ +Gt+++ + +dp+rWp+S+Wr+L+
  Neem_4289_f_1 291 AAALAANGKPFEVVYYPRASTPEFCVKASAVRAAMRVHWHCGMRFKMAFETEDSSRISWfMGTISSAQVADPIRWPKSPWRLLQ 374
                    678899****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-37106222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-28106218IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-21112213No hitNo description
PROSITE profilePS5086312.887113215IPR003340B3 DNA binding domain
PfamPF023622.2E-21113214IPR003340B3 DNA binding domain
SMARTSM010193.6E-22113215IPR003340B3 DNA binding domain
PfamPF065071.4E-32291374IPR010525Auxin response factor
PROSITE profilePS5174519.435612695IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MKEIEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS TPIPPLILCR  60
ATSLKFLADS ETDEVYAKIR LVPIPATEID FEDNDLSLNS AGSDAESDKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAQNGDLCVG IRRAKKGIGN ANDSLSSGWN SNHGSCVTVN  240
PYGGFSCFLR EEENKMVRNG NMNLNSCGSF NSGGNLRGNG GKVKPEMVLE AAALAANGKP  300
FEVVYYPRAS TPEFCVKASA VRAAMRVHWH CGMRFKMAFE TEDSSRISWF MGTISSAQVA  360
DPIRWPKSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIHLSPFSP PRKKLRLPQQ  420
LDFPLDGQFS MPSFSGNPLG PSSPLCCLSD NTPAGIQGAR HAQFGISLSD FHLNKKLQSG  480
LFLSSFQQLN PNSRVSDGIL TSHTSSNENL SCLLTMGNSS QNLEKSDSVK KHQFLLFGQP  540
ILTEQQISHS CSSDVNSQVF GKSSSDGSSD RLKALSDGLG STHEQQILPE KSSSSEFFWN  600
RGLRATEPTL DTGHCKVFME SEDVGRTLDL SALGSYEELY QRLANMFGIE RSEMLSHVLY  660
QDASGAMKQT GDEPFSDFMK TAKRLTILMG SSSDSVGRTW ITGMRTPKNG LDASNKTGPL  720
SIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-70839551388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424557.10.0hypothetical protein CICLE_v10027901mg
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV4SBC20.0V4SBC2_9R
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10